Cheap Apartments for Rent in the Mission Bay Neighborhood of San Diego, CA from $1,000 (10 Rentals)

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Search the lowest-cost Apartments available for rent right now in the Mission Bay area of San Diego.

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The Pacific Lamont
1 Bedroom Apartments

The Pacific Lamont

4040 Lamont StSan Diego, CA 92109
  • Utilities Included

San Diego's Best Affordable Neighborhoods

Learn about San Diego and the best places to live with original content written by our , Local Expert Hayden Goldberg

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Casa Riviera
Studio to 2 Bedroom Apartments

Casa Riviera

3773-3777 Haines StSan Diego, CA 92109
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4117 1/2 Ingraham St.
2 Bedroom Apartments

4117 1/2 Ingraham St.

4105-4123 Ingraham StSan Diego, CA 92109
Senior Living
  • Utilities Included

Know Your Rights - How Discrimination Laws Impact Landlords and Tenants

Read our practical guide to landlord and tenant rights. Understand protected classes, reasonable accommodations, and legal exceptions to prevent housing discrimination.

Mission Bay, San Diego, CA Local Guide

Cheapest Available Mission Bay Apartments for Rent

 

The cheapest available apartment rental in the Mission Bay area of San Diego, CA is a Studio unit found at The Presidio Apartments priced from $1,508. Ingraham - La Playa Point LP has the second lowest priced unit, which is a Studio apartment currently listed from $2,045. Here are the most affordable Mission Bay apartments for rent in San Diego, CA:

Apartment ListingModel NameBed/BathPriced From
The Presidio ApartmentsStudioStudio,1BA$1,508
Ingraham - La Playa Point LP0BR/1.0BAStudio,1BA$2,045
Bay fka Bay PointeStudioStudio,1BA$2,078

Best Value Apartments for Rent in Mission Bay, CA

As of April 21, 2025 the best value apartment in the Mission Bay area is the $3.10 price per square foot 3 Bedroom Townhome Model at Loma Palisades in the in the Old Town San Diego neighborhood starting from $3,725. The second greatest value Mission Bay apartment is the 2x2A Model at Bay fka Bay Pointe starting at $3,784 with a $3.78 price per square foot in the Bay Park neighborhood. Here is today’s list of the best values for Mission Bay apartments based on price per square foot:

Apartment ListingModel NameBed/BathPrice Per Sq.Ft.
Loma Palisades3 Bedroom Townhome3BR,1.5BA$3.10
Bay fka Bay Pointe2x2A2BR,2BA$3.78
Loft2015 ApartmentsAlta- Townhome2BR,2BA$3.02
1438 Pacific Beach Dr, Unit 14381438 Pacific Beach Dr2BR,1BA$4.05
1157 Felspar St, Unit 11571157 Felspar St2BR,1BA$3.88
Dylan Point LomaA11BR,1BA$3.87
Elan BayloftsTwo Bedroom, One Bath2BR,1BA$4.13
Bevel ApartmentsA41BR,1BA$3.86
Loma Portal1 Bedroom/1 Bath1BR,1BA$3.50
Mariners Cove ApartmentsThe Sunset Premier1BR,1BA$4.17

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Pet Friendly Lifestyle
Mission Bay, San Diego, CA

Ranked #124

Among neighborhoods in San Diego, CA for Apartment listings with Pet Friendly Amenities

Pet Friendliness Lifestyle Score

4.0
Pet Friendly

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Frequently Asked Questions about Cheap Mission Bay Apartments

What is a cheap apartment in Mission Bay?

A cheap apartment is any apartment up to the 30% percentile of cost for the area, which in Mission Bay is under $2,680.

What is the price of a cheap apartment in Mission Bay?

The cheapest apartment in Mission Bay is The Presidio Apartments which is listed at $1,921, while the average apartment in Mission Bay costs $12,500.

What types of apartments are the cheapest in Mission Bay?

Student, low-income, and by-the-bed apartments are typically the cheapest rentals in most cities, though they require qualifying criteria to rent. There are 11 regular apartments in Mission Bay that we think qualify as ‘cheap apartments’ that do not have special requirements to apply to rent.

How do the prices of cheap apartments compare to the average apartment in Mission Bay?

Cheap apartments in Mission Bay have an average cost of $358 which is $12,142 cheaper than the average rent for all rentals in Mission Bay.

Expert Rental Resources

Helpful Apartment Articles, How-To's and Tips

The rental experts at ApartmentHomeLiving.com provide you with top advice, tools, and tips for understanding the leasing process and finding the perfect rental. Here are a few helpful rental and leasing articles from our experts to guide you on your search.

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Top 10 Most Affordable Neighborhoods in San Diego: A Local Real Estate Expert Guide

Written by: Hayden Goldberg

Aloha! I’m Hayden, your local San Diego Realtor and relocation expert with ApartmentHomeLiving.com.

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Understanding Amenity Fees: Know Where You Might Be Able to Save Money

Written by: Amber Kanuckel

With the rising costs of housing, a lot of renters are asking this question: Is it possible to opt out of various amenities that your rental property offers so that you can avoid paying the fees.

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Know Your Rights - How Discrimination Laws Impact Landlords and Tenants

Written by: Christine Leonard, Esq.

Everyone needs a place to live and to call home. For decades, the federal government has established protections to ensure that individuals and families can find housing free from discriminatory barriers.

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Renting Smart: Lease Basics Every Renter Needs

Written by: Christine Leonard, Esq.

Often, in the excitement of finding a new place to live, there’s a rush to make it happen, and - too often - a new tenant signs a lease without reading it carefully.